STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5M3P5_LEPOCTumor necrosis factor receptor superfamily, member 9b. (280 aa)    
Predicted Functional Partners:
traf2
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
   
 
 0.680
LOC102695888
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
   
 
 0.680
traf1
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
   
 
 0.680
LOC102685166
Uncharacterized protein.
   
 
 0.630
CD247
CD247 molecule.
      
 0.588
LOC107079422
Uncharacterized protein.
   
  
 0.555
tbccd1
TBCC domain containing 1.
      
 0.545
cd276
CD276 molecule.
      
 0.544
CD40LG
CD40 ligand; Belongs to the tumor necrosis factor family.
      
 0.539
icmt
Protein-S-isoprenylcysteine O-methyltransferase.
      
 0.531
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.