STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5M3Q9_LEPOCPeptidylprolyl isomerase. (276 aa)    
Predicted Functional Partners:
stx5
Syntaxin 5A; Belongs to the syntaxin family.
   
 0.924
W5M3S9_LEPOC
Uncharacterized protein.
 
     0.916
W5M3N6_LEPOC
Uncharacterized protein.
 
      0.900
gosr1
Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.
    
 0.872
uso1
USO1 vesicle transport factor.
   
 0.771
gorasp2
Golgi reassembly stacking protein 2.
    
 0.760
gorasp1
Golgi reassembly stacking protein 1a.
    
 0.760
tmed2
Transmembrane p24 trafficking protein 2.
    
  0.650
scfd1
Sec1 family domain containing 1; Belongs to the STXBP/unc-18/SEC1 family.
    
 0.621
gosr2
Golgi SNAP receptor complex member 2; Involved in transport of proteins from the cis/medial-Golgi to the trans-Golgi network.
     
 0.615
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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