STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5M3R4_LEPOCBardet-Biedl syndrome 1. (507 aa)    
Predicted Functional Partners:
bbs9
Bardet-Biedl syndrome 9.
    
 0.996
bbs2
Bardet-Biedl syndrome 2 protein homolog.
   
 0.996
W5MWM9_LEPOC
Tetratricopeptide repeat domain 8.
   
 0.996
bbs7
Bardet-Biedl syndrome 7 protein homolog; The BBSome complex is thought to function as a coat complex required for sorting of specific membrane proteins to the primary cilia. The BBSome complex is required for ciliogenesis but is dispensable for centriolar satellite function.
   
 0.995
W5NCP5_LEPOC
Bardet-Biedl syndrome 4.
   
 0.993
bbs5
Bardet-Biedl syndrome 5 protein homolog; Required for ciliogenesis; Belongs to the BBS5 family.
  
 
 0.986
klhl41
Kelch-like family member 41b.
    
 0.949
klhl40
Kelch-like family member 40b.
    
 0.949
lztfl1
Leucine zipper transcription factor-like 1.
   
 0.931
W5N3D2_LEPOC
BBSome interacting protein 1.
    
 0.923
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.