STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cdh22Cadherin 22; Cadherins are calcium-dependent cell adhesion proteins. (801 aa)    
Predicted Functional Partners:
ctnnb1
Catenin (cadherin-associated protein), beta 1.
    
 0.817
LOC102695806
Junction plakoglobin b.
    
 0.774
W5M3L6_LEPOC
Catenin (cadherin-associated protein), alpha 2.
    
  0.698
W5M3Q5_LEPOC
Catenin (cadherin-associated protein), alpha 2.
    
  0.698
ctnna1
Catenin (cadherin-associated protein), alpha 1.
    
  0.698
W5NII4_LEPOC
Uncharacterized protein.
    
  0.698
CDH10
Cadherin 10, type 2a (T2-cadherin); Cadherins are calcium-dependent cell adhesion proteins.
  
 
 
0.604
LOC102686884
Cadherin 6; Cadherins are calcium-dependent cell adhesion proteins.
  
 
 
0.603
cdh15
Cadherin 15, type 1, M-cadherin (myotubule); Cadherins are calcium-dependent cell adhesion proteins.
  
  
 
0.561
cdh13
Cadherin 13, H-cadherin (heart).
     
0.557
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.