STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tfap4Transcription factor AP-4 (activating enhancer binding protein 4). (333 aa)    
Predicted Functional Partners:
LOC102682951
Cyclin-dependent kinase inhibitor 1Cb.
     
 0.701
cdkn1a
Cyclin-dependent kinase inhibitor 1A.
     
 0.701
cdkn1b
Cyclin-dependent kinase inhibitor 1Ba.
     
 0.701
W5N7Y2_LEPOC
Bromodomain PHD finger transcription factor.
    
   0.612
W5M2A3_LEPOC
TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor.
      
 0.583
usf2
Upstream transcription factor 2, c-fos interacting.
    
 
 0.571
LOC102697525
RNA binding motif protein 4.3.
      
 0.517
gmnn
Geminin DNA replication inhibitor.
    
 
 0.508
W5NBR9_LEPOC
CXXC finger protein 1a.
      
 0.505
W5MVX2_LEPOC
Upstream binding transcription factor, like.
    
 
 0.408
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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