STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
znfx1Zinc finger, NFX1-type containing 1. (1937 aa)    
Predicted Functional Partners:
W5MIU7_LEPOC
DRBM domain-containing protein.
   
  
 0.614
W5N812_LEPOC
Uncharacterized protein.
  
  
 
0.555
cmpk2
Cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial.
   
  
 0.504
nrde2
NRDE-2, necessary for RNA interference, domain containing.
      
 0.493
tent4b
Terminal nucleotidyltransferase 4B.
    
 
 0.487
tent4a
Terminal nucleotidyltransferase 4A.
    
 
 0.487
LOC107076412
Piwi domain-containing protein.
    
 
 0.442
LOC102696380
Argonaute RISC component 1; Belongs to the argonaute family.
    
 
 0.442
LOC102693418
Protein argonaute-4; Required for RNA-mediated gene silencing (RNAi). Binds to short RNAs such as microRNAs (miRNAs) and represses the translation of mRNAs which are complementary to them. Lacks endonuclease activity and does not appear to cleave target mRNAs; Belongs to the argonaute family. Ago subfamily.
    
 
 0.442
LOC107076412-2
Protein argonaute-1-like.
    
 
 0.442
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.