STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5M411_LEPOCDecapping enzyme, scavenger. (254 aa)    
Predicted Functional Partners:
W5NNT2_LEPOC
Sulfite oxidase; Belongs to the cytochrome b5 family.
    
   0.701
xrn1
5'-3' exoribonuclease 1.
    
 
 0.682
treh
Trehalase.
   
 
 0.612
dcp2
Decapping mRNA 2.
   
  
 0.585
W5M2N9_LEPOC
NADPH dependent diflavin oxidoreductase 1.
      
 0.557
xrn2
5'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. May promote termination of transcription by RNA polymerase II.
   
  
 0.553
W5NIT2_LEPOC
Decapping mRNA 1B.
      
 0.545
tsen2
tRNA-splicing endonuclease subunit Sen2; Constitutes one of the two catalytic subunit of the tRNA- splicing endonuclease complex, a complex responsible for identification and cleavage of the splice sites in pre-tRNA. It cleaves pre-tRNA at the 5'- and 3'-splice sites to release the intron. The products are an intron and two tRNA half-molecules bearing 2',3'-cyclic phosphate and 5'-OH termini. There are no conserved sequences at the splice sites, but the intron is invariably located at the same site in the gene, placing the splice sites an invariant distance from the constant structural [...]
      
 0.536
lsm12
LSM12 homolog b.
      
 0.491
W5NBI9_LEPOC
Enhancer of mRNA decapping 3 homolog (S. cerevisiae).
   
  
 0.454
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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