STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
upf3aUPF3A regulator of nonsense mediated mRNA decay. (462 aa)    
Predicted Functional Partners:
UPF2
UPF2 regulator of nonsense mediated mRNA decay.
   
 0.994
upf1
UPF1 RNA helicase and ATPase.
    
 0.992
magoh
Mago homolog, exon junction complex subunit.
    
 0.976
RANBP2
RAN binding protein 2.
   
 
  0.976
eif4a3
Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family.
   
 0.966
LOC102690973
SMG5 nonsense mediated mRNA decay factor.
   
 0.964
rbm8a
RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.
    
 0.961
rnps1
RNA binding protein S1, serine-rich domain.
    
 0.957
W5N908_LEPOC
Aly/REF export factor.
    
 0.955
SRRM1
Serine and arginine repetitive matrix 1.
    
 0.954
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.