STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102688210Si:dkey-12e7.4; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (264 aa)    
Predicted Functional Partners:
cbfa2t2
CBFA2/RUNX1 partner transcriptional co-repressor 2.
   
 
 0.475
med27
Mediator complex subunit 27.
   
 
 0.475
W5MA21_LEPOC
Uncharacterized protein.
   
 
 0.475
W5MA36_LEPOC
Uncharacterized protein; Belongs to the cytochrome P450 family.
   
 
 0.475
W5MA66_LEPOC
Uncharacterized protein.
   
 
 0.475
cbfa2t3
CBFA2/RUNX1 partner transcriptional co-repressor 3.
   
 
 0.475
runx1t1
RUNX1 partner transcriptional co-repressor 1.
   
 
 0.475
tbxas1
Thromboxane A synthase 1 (platelet); Belongs to the cytochrome P450 family.
   
 
 0.475
vars1
Valyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
   
  
 0.442
LOC102690949
Uncharacterized protein.
   
 
 0.402
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.