STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
syf2SYF2 pre-mRNA-splicing factor. (251 aa)    
Predicted Functional Partners:
ppil1
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
 0.999
crnkl1
Crooked neck pre-mRNA splicing factor 1.
    
 0.999
cdc40
Cell division cycle 40 homolog (S. cerevisiae).
    
 0.999
cwc22
CWC22 spliceosome associated protein homolog.
   
 0.998
slu7
SLU7 homolog, splicing factor.
   
 0.997
plrg1
Pleiotropic regulator 1.
    
 0.996
isy1
ISY1 splicing factor homolog.
   
 0.996
cdc5l
CDC5 cell division cycle 5-like (S. pombe).
    
 0.996
ccdc12
Coiled-coil domain containing 12.
    
  0.994
W5MNA9_LEPOC
Pre-mRNA processing factor 19.
    
 0.994
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.