STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5M4F1_LEPOCRNA binding motif protein 4.1. (149 aa)    
Predicted Functional Partners:
hnrnpk
Heterogeneous nuclear ribonucleoprotein K, like.
   
 0.732
LOC102684042
RRM domain-containing protein.
  
  0.710
W5MCE8_LEPOC
RRM domain-containing protein.
  
  0.706
LOC102683838
RRM domain-containing protein.
  
  0.703
eif2a
Eukaryotic translation initiation factor 2A; Functions in the early steps of protein synthesis of a small number of specific mRNAs. Acts by directing the binding of methionyl- tRNAi to 40S ribosomal subunits. In contrast to the eIF-2 complex, it binds methionyl-tRNAi to 40S subunits in a codon-dependent manner, whereas the eIF-2 complex binds methionyl-tRNAi to 40S subunits in a GTP-dependent manner.
   
    0.684
tra2b
RRM domain-containing protein.
  
  0.653
tra2a
Transformer 2 alpha homolog.
  
  0.631
hnrnpa1
Uncharacterized protein.
  
0.625
W5MJA0_LEPOC
Heterogeneous nuclear ribonucleoprotein A3.
  
0.625
LOC102699125
Heterogeneous nuclear ribonucleoprotein D-like.
  
  0.619
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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