STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sys1Protein SYS1 homolog; Involved in protein trafficking. Belongs to the SYS1 family. (159 aa)    
Predicted Functional Partners:
arfrp1
ADP-ribosylation factor related protein 1.
   
 
 0.863
RIC1
RIC1 homolog, RAB6A GEF complex partner 1.
     
 0.744
cog3
Component of oligomeric golgi complex 3.
     
 0.668
gcc1
GRIP and coiled-coil domain containing 1.
     
 0.666
cog1
Component of oligomeric golgi complex 1.
   
 
 0.663
cog8
Conserved oligomeric Golgi complex subunit 8; Belongs to the COG8 family.
   
 
  0.655
cog6
Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.
     
 0.655
cog7
Component of oligomeric golgi complex 7.
     
 0.645
stx16
Syntaxin 16.
     
 0.645
vps53
VPS53 subunit of GARP complex.
     
 0.644
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.