STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kcnn1Potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1a. (580 aa)    
Predicted Functional Partners:
kcnma1
Potassium large conductance calcium-activated channel, subfamily M, alpha member 1a.
     
 0.862
KCNMB4
Potassium calcium-activated channel subfamily M regulatory beta subunit 4.
     
 0.826
kcnn4
Potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4.
  
  
0.751
W5LYW6_LEPOC
Si:ch211-38m6.7.
     
 0.666
kcnj13
Potassium inwardly-rectifying channel, subfamily J, member 13.
   
 
 0.656
CALM1
Calmodulin 1; Belongs to the calmodulin family.
    
 
 0.654
calm1
Uncharacterized protein; Belongs to the calmodulin family.
    
 
 0.654
CALM2
Calmodulin 2; Belongs to the calmodulin family.
    
 
 0.654
lipt2
Putative lipoyltransferase 2, mitochondrial; Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate- dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate. Belongs to the LipB family.
     
 0.648
LOC102687607
Uncharacterized protein.
     
 0.572
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.