STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lmo2LIM domain only 2 (rhombotin-like 1). (161 aa)    
Predicted Functional Partners:
LOC102687572
T-cell acute lymphocytic leukemia 1.
   
 0.994
gata1
GATA binding protein 1a.
    
 0.985
ldb1
LIM domain binding 1a.
    
 0.962
ldb2
LIM domain binding 2a.
    
 0.943
TCF4
Transcription factor 4.
    
 0.844
tcf12
Transcription factor 12.
    
 0.844
W5MFW8_LEPOC
Transcription factor 3a.
    
 0.843
gata2
GATA binding protein 2a.
    
 0.817
gata4
GATA binding protein 4.
    
 0.784
gata6
GATA binding protein 6.
    
 0.784
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.