STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rabgap1RAB GTPase activating protein 1. (1067 aa)    
Predicted Functional Partners:
rabgef1
RAB guanine nucleotide exchange factor (GEF) 1.
   
  0.691
LOC102685971
Uncharacterized protein.
   
  0.691
rab6a
RAB6A, member RAS oncogene family.
    
 0.682
rab41
RAB41, member RAS oncogene family.
    
 0.682
W5N1J9_LEPOC
Golgi-associated, gamma adaptin ear containing, ARF binding protein 1.
    
  0.588
rab36
RAB36, member RAS oncogene family.
    
 0.545
rab34
RAB34, member RAS oncogene family a.
    
 0.545
rabep1
Rabaptin, RAB GTPase binding effector protein 1.
     
 0.482
rab43
RAB43, member RAS oncogene family.
    
 0.471
W5M0R4_LEPOC
Uncharacterized protein.
    
 0.439
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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