STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5M530_LEPOCSushi domain containing 1. (747 aa)    
Predicted Functional Partners:
ccdc115
Coiled-coil domain containing 115.
    
 
 0.611
hspa4l
Heat shock protein 4 like.
    
 
 0.588
SUSD2
Sushi domain containing 2.
      
 0.558
tdrd3
Tudor domain containing 3.
      
 0.540
W5N9M4_LEPOC
SPG11 vesicle trafficking associated, spatacsin.
      
 0.537
mst1r
Macrophage stimulating 1 receptor b.
    
  0.528
met
MET proto-oncogene, receptor tyrosine kinase.
    
  0.528
ptk7
Protein tyrosine kinase 7a; Belongs to the protein kinase superfamily. Tyr protein kinase family.
    
  0.522
ripk4
Receptor-interacting serine-threonine kinase 4.
   
  0.504
W5MSM4_LEPOC
Protein kinase domain-containing protein.
   
  0.504
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.