STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5M5M3_LEPOCRNA pseudouridine synthase D4. (355 aa)    
Predicted Functional Partners:
malsu1
Si:zfos-1192g2.3.
  
 
 0.914
W5M5D7_LEPOC
GTP binding protein 3, mitochondrial.
  
 
 0.889
mrpl21
Mitochondrial ribosomal protein L21.
  
   0.886
mrpl17
Mitochondrial ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.
   
   0.886
W5MG82_LEPOC
Uncharacterized protein.
  
 
 0.882
W5NEK3_LEPOC
Pseudouridine synthase 7.
   
 
 0.869
rpl23
Ribosomal protein L23; Belongs to the universal ribosomal protein uL14 family.
   
 
 0.865
pus7l
Pseudouridine synthase 7 like.
   
 
 0.850
mtg1
Mitochondrial ribosome-associated GTPase 1.
   
 
 0.849
GTPBP8
GTP binding protein 8 (putative).
   
 
 0.847
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.