STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ptf1aPancreas associated transcription factor 1a. (268 aa)    
Predicted Functional Partners:
rbpjl
Recombination signal binding protein for immunoglobulin kappa J region-like.
   
 0.694
rbpj
Recombination signal binding protein for immunoglobulin kappa J region b.
   
 0.691
TCF4
Transcription factor 4.
   
 0.595
tcf12
Transcription factor 12.
   
 0.595
W5MFW8_LEPOC
Transcription factor 3a.
   
 0.585
pdx1
Pancreatic and duodenal homeobox 1.
   
 
 0.550
ldb2
LIM domain binding 2a.
    
 0.543
ldb1
LIM domain binding 1a.
    
 0.543
prdm13
PR domain containing 13.
   
 
 0.501
vsx1
Visual system homeobox 1 homolog, chx10-like.
   
  
 0.480
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.