STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vps13dVacuolar protein sorting 13 homolog D. (4398 aa)    
Predicted Functional Partners:
kiaa2013
Si:dkeyp-104h9.5.
      
 0.559
prr16
Proline rich 16.
      
 0.511
KMT2A
Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. TRX/MLL subfamily.
  
  
 0.469
zzef1
Zinc finger, ZZ-type with EF hand domain 1.
   
    0.439
W5LZ16_LEPOC
C2H2-type domain-containing protein.
   
  
 0.432
ATG2B
Autophagy related 2B.
   
  
0.432
VPS13B
Vacuolar protein sorting 13 homolog B.
   
  
0.426
igsf21
Immunoglobin superfamily, member 21a.
      
 0.424
W5NCP4_LEPOC
POF1B actin binding protein.
  
     0.417
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.