maneal protein (Lepisosteus oculatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

maneal

Mannosidase endo-alpha like. (456 aa)

Predicted Functional Partners:

ak9

0.931

W5MTQ7_LEPOC

0.886

W5N0B4_LEPOC

0.886

gmps

0.760

grin1

0.743

cask

0.714

W5NJ40_LEPOC

0.712

rrm1

0.684

aprt

0.668

LOC102689087

0.668

Your Current Organism:

Lepisosteus oculatus

NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC102689087	W5NJ40_LEPOC	ENSLOCP00000006992	ENSLOCP00000020649	Zgc:174895.	Epoxide hydrolase 2, cytoplasmic.	0.896
LOC102689087	ak9	ENSLOCP00000006992	ENSLOCP00000021203	Zgc:174895.	Adenylate kinase 9.	0.938
LOC102689087	cask	ENSLOCP00000006992	ENSLOCP00000002407	Zgc:174895.	Calcium/calmodulin-dependent serine protein kinase a; Belongs to the MAGUK family.	0.917
LOC102689087	gmps	ENSLOCP00000006992	ENSLOCP00000003762	Zgc:174895.	Guanine monophosphate synthase.	0.974
LOC102689087	maneal	ENSLOCP00000006992	ENSLOCP00000003945	Zgc:174895.	Mannosidase endo-alpha like.	0.668
W5MTQ7_LEPOC	W5N0B4_LEPOC	ENSLOCP00000011766	ENSLOCP00000014073	NME/NM23 family member 8; Belongs to the NDK family.	Uncharacterized protein; Belongs to the NDK family.	0.919
W5MTQ7_LEPOC	ak9	ENSLOCP00000011766	ENSLOCP00000021203	NME/NM23 family member 8; Belongs to the NDK family.	Adenylate kinase 9.	0.956
W5MTQ7_LEPOC	cask	ENSLOCP00000011766	ENSLOCP00000002407	NME/NM23 family member 8; Belongs to the NDK family.	Calcium/calmodulin-dependent serine protein kinase a; Belongs to the MAGUK family.	0.889
W5MTQ7_LEPOC	gmps	ENSLOCP00000011766	ENSLOCP00000003762	NME/NM23 family member 8; Belongs to the NDK family.	Guanine monophosphate synthase.	0.416
W5MTQ7_LEPOC	maneal	ENSLOCP00000011766	ENSLOCP00000003945	NME/NM23 family member 8; Belongs to the NDK family.	Mannosidase endo-alpha like.	0.886
W5MTQ7_LEPOC	rrm1	ENSLOCP00000011766	ENSLOCP00000009653	NME/NM23 family member 8; Belongs to the NDK family.	Ribonucleoside-diphosphate reductase; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.	0.952
W5N0B4_LEPOC	W5MTQ7_LEPOC	ENSLOCP00000014073	ENSLOCP00000011766	Uncharacterized protein; Belongs to the NDK family.	NME/NM23 family member 8; Belongs to the NDK family.	0.919
W5N0B4_LEPOC	ak9	ENSLOCP00000014073	ENSLOCP00000021203	Uncharacterized protein; Belongs to the NDK family.	Adenylate kinase 9.	0.956
W5N0B4_LEPOC	cask	ENSLOCP00000014073	ENSLOCP00000002407	Uncharacterized protein; Belongs to the NDK family.	Calcium/calmodulin-dependent serine protein kinase a; Belongs to the MAGUK family.	0.889
W5N0B4_LEPOC	gmps	ENSLOCP00000014073	ENSLOCP00000003762	Uncharacterized protein; Belongs to the NDK family.	Guanine monophosphate synthase.	0.416
W5N0B4_LEPOC	maneal	ENSLOCP00000014073	ENSLOCP00000003945	Uncharacterized protein; Belongs to the NDK family.	Mannosidase endo-alpha like.	0.886
W5N0B4_LEPOC	rrm1	ENSLOCP00000014073	ENSLOCP00000009653	Uncharacterized protein; Belongs to the NDK family.	Ribonucleoside-diphosphate reductase; Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.	0.952
W5NJ40_LEPOC	LOC102689087	ENSLOCP00000020649	ENSLOCP00000006992	Epoxide hydrolase 2, cytoplasmic.	Zgc:174895.	0.896
W5NJ40_LEPOC	ak9	ENSLOCP00000020649	ENSLOCP00000021203	Epoxide hydrolase 2, cytoplasmic.	Adenylate kinase 9.	0.871
W5NJ40_LEPOC	aprt	ENSLOCP00000020649	ENSLOCP00000005714	Epoxide hydrolase 2, cytoplasmic.	Adenine phosphoribosyltransferase.	0.896