W5M6G1_LEPOC protein (Lepisosteus oculatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

W5M6G1_LEPOC

Pentraxin 3, long b. (418 aa)

Predicted Functional Partners:

tnfaip6

0.783

W5NJ85_LEPOC

0.609

W5M2V3_LEPOC

0.540

fgf6

0.524

W5NCG0_LEPOC

0.522

fgf8

0.456

SELE

0.423

dgke

0.416

fgf22

0.407

fgf10

0.407

Your Current Organism:

Lepisosteus oculatus

NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SELE	W5M6G1_LEPOC	ENSLOCP00000001601	ENSLOCP00000003969	Selectin P.	Pentraxin 3, long b.	0.423
W5M2V3_LEPOC	W5M6G1_LEPOC	ENSLOCP00000002711	ENSLOCP00000003969	Alpha-1-microglobulin/bikunin precursor.	Pentraxin 3, long b.	0.540
W5M6G1_LEPOC	SELE	ENSLOCP00000003969	ENSLOCP00000001601	Pentraxin 3, long b.	Selectin P.	0.423
W5M6G1_LEPOC	W5M2V3_LEPOC	ENSLOCP00000003969	ENSLOCP00000002711	Pentraxin 3, long b.	Alpha-1-microglobulin/bikunin precursor.	0.540
W5M6G1_LEPOC	W5NCG0_LEPOC	ENSLOCP00000003969	ENSLOCP00000018319	Pentraxin 3, long b.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.522
W5M6G1_LEPOC	W5NJ85_LEPOC	ENSLOCP00000003969	ENSLOCP00000020694	Pentraxin 3, long b.	Hexose-binding lectin 4.	0.609
W5M6G1_LEPOC	dgke	ENSLOCP00000003969	ENSLOCP00000017073	Pentraxin 3, long b.	Diacylglycerol kinase.	0.416
W5M6G1_LEPOC	fgf10	ENSLOCP00000003969	ENSLOCP00000015130	Pentraxin 3, long b.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.407
W5M6G1_LEPOC	fgf22	ENSLOCP00000003969	ENSLOCP00000006311	Pentraxin 3, long b.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.407
W5M6G1_LEPOC	fgf6	ENSLOCP00000003969	ENSLOCP00000020593	Pentraxin 3, long b.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.524
W5M6G1_LEPOC	fgf8	ENSLOCP00000003969	ENSLOCP00000014352	Pentraxin 3, long b.	Fibroblast growth factor 8 b; Belongs to the heparin-binding growth factors family.	0.456
W5M6G1_LEPOC	tnfaip6	ENSLOCP00000003969	ENSLOCP00000003166	Pentraxin 3, long b.	Tumor necrosis factor, alpha-induced protein 6.	0.783
W5NCG0_LEPOC	W5M6G1_LEPOC	ENSLOCP00000018319	ENSLOCP00000003969	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Pentraxin 3, long b.	0.522
W5NCG0_LEPOC	fgf10	ENSLOCP00000018319	ENSLOCP00000015130	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.485
W5NCG0_LEPOC	fgf22	ENSLOCP00000018319	ENSLOCP00000006311	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.518
W5NCG0_LEPOC	fgf6	ENSLOCP00000018319	ENSLOCP00000020593	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	0.424
W5NCG0_LEPOC	fgf8	ENSLOCP00000018319	ENSLOCP00000014352	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Fibroblast growth factor 8 b; Belongs to the heparin-binding growth factors family.	0.507
W5NJ85_LEPOC	W5M6G1_LEPOC	ENSLOCP00000020694	ENSLOCP00000003969	Hexose-binding lectin 4.	Pentraxin 3, long b.	0.609
dgke	W5M6G1_LEPOC	ENSLOCP00000017073	ENSLOCP00000003969	Diacylglycerol kinase.	Pentraxin 3, long b.	0.416
fgf10	W5M6G1_LEPOC	ENSLOCP00000015130	ENSLOCP00000003969	Fibroblast growth factor; Belongs to the heparin-binding growth factors family.	Pentraxin 3, long b.	0.407