W5M6L5_LEPOC protein (Lepisosteus oculatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

W5M6L5_LEPOC

Uncharacterized protein. (46 aa)

Predicted Functional Partners:

gnal

0.808

W5NMQ4_LEPOC

0.808

W5MYS6_LEPOC

0.749

pthlh

0.747

gnb5

0.739

vip

0.735

crh

0.719

W5NN84_LEPOC

0.706

LOC102693960

0.703

gcg

0.703

Your Current Organism:

Lepisosteus oculatus

NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC102693960	W5M6L5_LEPOC	ENSLOCP00000010332	ENSLOCP00000004023	Fibroblast activation protein, alpha; Belongs to the peptidase S9B family.	Uncharacterized protein.	0.703
LOC102693960	W5NMQ4_LEPOC	ENSLOCP00000010332	ENSLOCP00000021913	Fibroblast activation protein, alpha; Belongs to the peptidase S9B family.	Uncharacterized protein.	0.663
LOC102693960	gnal	ENSLOCP00000010332	ENSLOCP00000002598	Fibroblast activation protein, alpha; Belongs to the peptidase S9B family.	Uncharacterized protein.	0.663
LOC102693960	gnb5	ENSLOCP00000010332	ENSLOCP00000016462	Fibroblast activation protein, alpha; Belongs to the peptidase S9B family.	Guanine nucleotide binding protein (G protein), beta 5b.	0.664
W5M6L5_LEPOC	LOC102693960	ENSLOCP00000004023	ENSLOCP00000010332	Uncharacterized protein.	Fibroblast activation protein, alpha; Belongs to the peptidase S9B family.	0.703
W5M6L5_LEPOC	W5MYS6_LEPOC	ENSLOCP00000004023	ENSLOCP00000013535	Uncharacterized protein.	Adenylate cyclase activating polypeptide 1a.	0.749
W5M6L5_LEPOC	W5NMQ4_LEPOC	ENSLOCP00000004023	ENSLOCP00000021913	Uncharacterized protein.	Uncharacterized protein.	0.808
W5M6L5_LEPOC	W5NN84_LEPOC	ENSLOCP00000004023	ENSLOCP00000022093	Uncharacterized protein.	Urotensin 1.	0.706
W5M6L5_LEPOC	crh	ENSLOCP00000004023	ENSLOCP00000021917	Uncharacterized protein.	Corticotropin releasing hormone a.	0.719
W5M6L5_LEPOC	gcg	ENSLOCP00000004023	ENSLOCP00000010345	Uncharacterized protein.	Glucagon b.	0.703
W5M6L5_LEPOC	gnal	ENSLOCP00000004023	ENSLOCP00000002598	Uncharacterized protein.	Uncharacterized protein.	0.808
W5M6L5_LEPOC	gnb5	ENSLOCP00000004023	ENSLOCP00000016462	Uncharacterized protein.	Guanine nucleotide binding protein (G protein), beta 5b.	0.739
W5M6L5_LEPOC	pthlh	ENSLOCP00000004023	ENSLOCP00000020387	Uncharacterized protein.	Parathyroid hormone-like hormone a.	0.747
W5M6L5_LEPOC	vip	ENSLOCP00000004023	ENSLOCP00000019083	Uncharacterized protein.	Vasoactive intestinal peptide.	0.735
W5MYS6_LEPOC	W5M6L5_LEPOC	ENSLOCP00000013535	ENSLOCP00000004023	Adenylate cyclase activating polypeptide 1a.	Uncharacterized protein.	0.749
W5MYS6_LEPOC	W5NMQ4_LEPOC	ENSLOCP00000013535	ENSLOCP00000021913	Adenylate cyclase activating polypeptide 1a.	Uncharacterized protein.	0.572
W5MYS6_LEPOC	W5NN84_LEPOC	ENSLOCP00000013535	ENSLOCP00000022093	Adenylate cyclase activating polypeptide 1a.	Urotensin 1.	0.400
W5MYS6_LEPOC	crh	ENSLOCP00000013535	ENSLOCP00000021917	Adenylate cyclase activating polypeptide 1a.	Corticotropin releasing hormone a.	0.476
W5MYS6_LEPOC	gnal	ENSLOCP00000013535	ENSLOCP00000002598	Adenylate cyclase activating polypeptide 1a.	Uncharacterized protein.	0.583
W5MYS6_LEPOC	gnb5	ENSLOCP00000013535	ENSLOCP00000016462	Adenylate cyclase activating polypeptide 1a.	Guanine nucleotide binding protein (G protein), beta 5b.	0.521