STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5M6Q1_LEPOCTax1 (human T-cell leukemia virus type I) binding protein 3. (126 aa)    
Predicted Functional Partners:
ctnnb1
Catenin (cadherin-associated protein), beta 1.
   
 
 0.800
LOC102695806
Junction plakoglobin b.
   
 
 0.704
W5MCW6_LEPOC
Rhotekin 2b.
    
  0.663
rtkn2
Rhotekin 2a.
    
  0.663
rhoc
Ras homolog family member Cb.
   
 
 0.551
LOC102682211
Ras homolog gene family, member Ab.
   
 
 0.551
W5NAW2_LEPOC
Ras homolog gene family, member Ab.
   
 
 0.551
rhob
Uncharacterized protein.
   
 
 0.551
rnd3
Rho family GTPase 3b.
   
 
 0.537
rnd1
Rho family GTPase 1a.
   
 
 0.537
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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