STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102695918Si:dkey-34d22.5. (215 aa)    
Predicted Functional Partners:
smcr8
Smith-Magenis syndrome chromosome region, candidate 8a.
    
 0.872
c9orf72
Zgc:100846.
    
  0.869
sqstm1
Sequestosome 1.
    
 0.863
rab39b
RAB39B, member RAS oncogene family b.
  
  
 
0.789
W5MJB7_LEPOC
Uncharacterized protein.
    
 0.662
rab3ip
RAB3A interacting protein (rabin3).
    
 0.662
ccz1
CCZ1 homolog, vacuolar protein trafficking and biogenesis associated.
    
 0.648
LOC102691742
CHM Rab escort protein.
    
 0.622
exoc4
Exocyst complex component 4.
    
 0.606
rabif
RAB interacting factor.
    
 
 0.605
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.