STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5M6X1_LEPOCWD repeat domain 91. (744 aa)    
Predicted Functional Partners:
wdr81
WD repeat domain 81.
   
 
 0.971
ccdc93
Coiled-coil domain containing 93.
      
 0.528
ascc3
Activating signal cointegrator 1 complex subunit 3.
      
 0.517
becn1
Beclin 1, autophagy related.
    
 
 0.502
vps18
VPS18 core subunit of CORVET and HOPS complexes.
      
 0.493
ccz1
CCZ1 homolog, vacuolar protein trafficking and biogenesis associated.
      
 0.447
WDFY4
WDFY family member 4.
    
 
 0.444
W5MD28_LEPOC
Neutral sphingomyelinase (N-SMase) activation associated factor.
    
 
0.444
wdfy3
WD repeat and FYVE domain containing 3.
    
 
 0.444
lyst
Lysosomal trafficking regulator.
    
 
 0.444
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.