STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5M6Z1_LEPOCUncharacterized protein. (1936 aa)    
Predicted Functional Partners:
W5M2L8_LEPOC
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
 0.868
LOC102696124
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
 0.868
ENSLOCP00000017361
annotation not available
   
 0.868
HGFAC
HGF activator.
    
 0.661
LOC102693234
Fras1 related extracellular matrix 1b.
    
 0.645
frem1
Fras1 related extracellular matrix 1a.
    
 0.645
W5MKP6_LEPOC
Fraser extracellular matrix complex subunit 1.
    
  0.596
W5MFH7_LEPOC
GLE1 RNA export mediator.
    
 0.559
rps21
40S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family.
   
  0.531
dhcr7
7-dehydrocholesterol reductase.
     
 0.530
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.