STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5M713_LEPOCGeranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX. (338 aa)    
Predicted Functional Partners:
ptar1
Protein prenyltransferase alpha subunit repeat containing 1.
    
 0.999
LOC102691742
CHM Rab escort protein.
    
 0.981
ykt6
YKT6 v-SNARE homolog (S. cerevisiae); Belongs to the synaptobrevin family.
    
 
 0.919
W5M0R4_LEPOC
Uncharacterized protein.
    
 0.883
LOC102684782
Zgc:171927.
    
 0.883
rab1a
RAB1A, member RAS oncogene family a.
    
 0.883
rab43
RAB43, member RAS oncogene family.
    
 0.810
rab9a
RAB9A, member RAS oncogene family.
    
 0.784
rab9b
RAB9B, member RAS oncogene family.
    
 0.784
W5NP94_LEPOC
RAB9B, member RAS oncogene family.
    
 0.784
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.