STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tpm4Tropomyosin 4a; Belongs to the tropomyosin family. (284 aa)    
Predicted Functional Partners:
W5LY26_LEPOC
Troponin T2e, cardiac.
   
 0.904
W5MUD5_LEPOC
Troponin T type 2b (cardiac).
   
 0.904
W5NMY9_LEPOC
Troponin T2c, cardiac.
   
 0.901
myl1
Myosin, light polypeptide 3, skeletal muscle.
   
 0.897
W5MUB5_LEPOC
Troponin I type 1a (skeletal, slow).
   
 0.861
W5M2E7_LEPOC
Troponin T type 3a (skeletal, fast).
   
 0.856
W5MU41_LEPOC
Small integral membrane protein 20.
   
 0.849
tnni2
Troponin I type 2a (skeletal, fast), tandem duplicate 4.
   
 0.826
gatd1
Glutamine amidotransferase like class 1 domain containing 1.
   
 0.816
W5LXS1_LEPOC
Uncharacterized protein.
   
 0.813
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.