STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5M728_LEPOCRotatin. (2218 aa)    
Predicted Functional Partners:
aarsd1
Alanyl-tRNA synthetase domain containing 1.
     
 0.854
pla2g4a
Phospholipase A2.
   
 
 0.849
stil
STIL centriolar assembly protein.
    
 
 0.651
th
Tyrosine hydroxylase.
     
 0.592
ppp1r35
Protein phosphatase 1, regulatory subunit 35.
      
 0.586
W5M8P7_LEPOC
Centrosomal protein 85.
      
 0.584
W5N0D4_LEPOC
Phospholipase A2, group VI (cytosolic, calcium-independent).
   
 0.564
morn2
MORN repeat containing 2.
      
 0.557
got2
Aspartate aminotransferase.
    
 0.553
tyr
Tyrosinase.
     
 0.539
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.