STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
farp1FERM, RhoGEF (ARHGEF) and pleckstrin domain protein 1 (chondrocyte-derived). (1040 aa)    
Predicted Functional Partners:
cdc42
Cell division cycle 42.
    
 0.807
LOC102698253
Cell division cycle 42, like.
    
 0.800
rap1a
RAP1A, member of RAS oncogene family b.
     
 0.657
rap1b
RAP1B, member of RAS oncogene family.
     
 0.657
nrp1
Neuropilin; Belongs to the neuropilin family.
     
 0.634
mst1r
Macrophage stimulating 1 receptor b.
    
  0.621
met
MET proto-oncogene, receptor tyrosine kinase.
    
  0.621
W5MAJ9_LEPOC
Phosphatidylinositol-4-phosphate 5-kinase, type I, gamma a.
     
 0.588
pip5k1a
Phosphatidylinositol-4-phosphate 5-kinase, type I, alpha, b.
     
 0.588
pip5k1b
Phosphatidylinositol-4-phosphate 5-kinase, type I, beta b.
     
 0.588
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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