STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rps6ka3Ribosomal protein S6 kinase. (720 aa)    
Predicted Functional Partners:
mapk1
Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.
    
0.902
W5NEK9_LEPOC
RAD50 interactor 1.
    
 0.870
tsc2
TSC complex subunit 2.
    
 0.862
stx18
Syntaxin 18.
    
 0.862
use1
Unconventional SNARE in the ER 1 homolog (S. cerevisiae).
    
 0.858
LOC102697582
TSC complex subunit 1a.
    
 0.833
zw10
Zw10 kinetochore protein.
    
 0.824
nbas
Neuroblastoma amplified sequence.
    
 0.808
tbc1d7
TBC1 domain family, member 7.
     
 0.799
W5MZ31_LEPOC
Activating transcription factor 4b.
     
 0.792
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.