STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5M883_LEPOCVWFD domain-containing protein. (448 aa)    
Predicted Functional Partners:
LOC102695064
VWFD domain-containing protein.
 
     
0.884
LOC107076473
VWFD domain-containing protein.
 
     
0.880
W5M2L8_LEPOC
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
  0.812
LOC102696124
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
  0.812
ENSLOCP00000017361
annotation not available
   
  0.812
W5M863_LEPOC
Uncharacterized protein.
 
      0.737
LOC102693234
Fras1 related extracellular matrix 1b.
    
 0.645
frem1
Fras1 related extracellular matrix 1a.
    
 0.645
W5MKP6_LEPOC
Fraser extracellular matrix complex subunit 1.
    
  0.596
W5MFH7_LEPOC
GLE1 RNA export mediator.
    
 0.559
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.