Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
W5M883_LEPOCVWFD domain-containing protein. (448 aa)    
Predicted Functional Partners:
LOC102695064
VWFD domain-containing protein.
 
     
0.884
LOC107076473
VWFD domain-containing protein.
 
     
0.880
W5M863_LEPOC
Uncharacterized protein.
 
      0.737
W5M2L8_LEPOC
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
  0.639
LOC102696124
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
  0.639
ENSLOCP00000017361
annotation not available
   
  0.639
RANBP2
RAN binding protein 2.
    
  0.565
fas
Uncharacterized protein.
    
  0.473
ASF1A
Anti-silencing function 1A histone chaperone.
    
 0.460
asf1b
Anti-silencing function 1Ba histone chaperone.
    
 0.460
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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