STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
btf3l4Transcription factor BTF3; Belongs to the NAC-beta family. (160 aa)    
Predicted Functional Partners:
naca
Nascent polypeptide associated complex subunit alpha.
   
 
 0.987
W5MEW7_LEPOC
NAC alpha domain containing.
   
 
 0.974
rpl23a
Ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family.
   
 
 0.972
rpl6
Ribosomal protein L6.
   
 
 0.958
rpl32
Ribosomal protein L32.
   
   0.952
rpl21
Ribosomal protein L21.
   
   0.948
rpl30
Ribosomal protein L30.
   
   0.944
rpl10
Ribosomal protein L10.
   
 
 0.941
W5MCK3_LEPOC
Ribosomal protein L35.
   
   0.940
rpl37a
Ribosomal protein L37a.
   
 
 0.939
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.