STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cul3Cullin 3a; Belongs to the cullin family. (767 aa)    
Predicted Functional Partners:
ubxn7
UBX domain protein 7.
   
 0.996
skp1
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
   
 0.991
spopl
Speckle type BTB/POZ protein like a.
   
 0.990
LOC102689826
Speckle type BTB/POZ protein.
   
 0.990
skp2
S-phase kinase-associated protein 2, E3 ubiquitin protein ligase.
    
 0.986
kctd5
Potassium channel tetramerization domain containing 5a.
    
 0.982
klhl11
Kelch-like family member 11.
    
 0.979
cops5
COP9 signalosome subunit 5.
   
 0.976
gps1
G protein pathway suppressor 1.
    
 0.975
klhl22
Kelch-like family member 22.
    
 0.968
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.