STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tbccd1TBCC domain containing 1. (560 aa)    
Predicted Functional Partners:
PPP2R3B
EF-hand domain-containing protein.
    
   0.601
ppp2r3a
Protein phosphatase 2, regulatory subunit B'', alpha.
    
   0.601
ppp2r3c
Protein phosphatase 2, regulatory subunit B'', gamma.
    
   0.601
MORN1
MORN repeat containing 1.
      
 0.589
shq1
SHQ1, H/ACA ribonucleoprotein assembly factor.
   
    0.584
icmt
Protein-S-isoprenylcysteine O-methyltransferase.
      
 0.563
gins1
GINS complex subunit 1 (Psf1 homolog).
      
 0.562
bckdhb
Branched chain keto acid dehydrogenase E1 subunit beta.
      
 0.559
W5NIG2_LEPOC
Popeye domain containing 3.
      
 0.547
W5M3P5_LEPOC
Tumor necrosis factor receptor superfamily, member 9b.
      
 0.545
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.