STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gtf3aGeneral transcription factor IIIA, b. (373 aa)    
Predicted Functional Partners:
ak9
Adenylate kinase 9.
    
  0.871
GTF3C1
General transcription factor IIIC subunit 1.
    
 0.851
W5N007_LEPOC
SANT domain-containing protein.
    
 0.844
W5MWF3_LEPOC
BRF1 RNA polymerase III transcription initiation factor subunit b.
   
 
 0.767
tbp
TATA box binding protein.
   
 0.756
W5MD51_LEPOC
General transcription factor IIIC, polypeptide 3.
    
 0.745
W5MH71_LEPOC
RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.740
gtf3c4
General transcription factor IIIC, polypeptide 4.
    
 0.706
polr3b
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
  0.699
W5MF10_LEPOC
General transcription factor IIIC, polypeptide 5.
    
 0.696
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.