STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5M9Y8_LEPOCRearranged L-myc fusion. (1919 aa)    
Predicted Functional Partners:
ak9
Adenylate kinase 9.
    
  0.871
bard1
BRCA1 associated RING domain 1.
   
  0.527
W5MSQ6_LEPOC
AT rich interactive domain 4A (RBP1-like).
   
 0.518
W5NG20_LEPOC
Translocase of outer mitochondrial membrane 20.
   
 0.518
kdm6a
Lysine (K)-specific demethylase 6A.
   
 0.517
YTHDC2
YTH domain containing 2.
   
  0.494
mrps16
Mitochondrial ribosomal protein S16.
   
 0.493
lamtor2
Late endosomal/lysosomal adaptor, MAPK and MTOR activator 2.
    
  0.480
mrps11
Mitochondrial ribosomal protein S11; Belongs to the universal ribosomal protein uS11 family.
    
  0.478
CYB5R4
Cytochrome b5 reductase 4.
    
  0.478
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.