Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rab11bRAB11B, member RAS oncogene family, a. (174 aa)    
Predicted Functional Partners:
W5MTZ6_LEPOC
RAB11 family interacting protein 2 (class I).
   
 0.990
W5NCQ2_LEPOC
Uncharacterized protein.
   
 0.990
W5MSJ7_LEPOC
Uncharacterized protein.
    
 0.989
W5N5V7_LEPOC
Exocyst complex component 2; Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Belongs to the SEC5 family.
    
 0.925
RAB11FIP3
RAB11 family interacting protein 3.
    
 0.912
rab11fip4
RAB11 family interacting protein 4 (class II) b.
    
 0.912
rab25
RAB11a, member RAS oncogene family, like.
  
  
 
0.901
rab11a
RAB11a, member RAS oncogene family.
  
  
 
0.901
W5MPG8_LEPOC
Phosphatidylinositol 4-kinase, catalytic, beta; Belongs to the PI3/PI4-kinase family.
    
 0.875
W5MJB7_LEPOC
Uncharacterized protein.
    
 0.861
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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