W5MAK9_LEPOC protein (Lepisosteus oculatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

W5MAK9_LEPOC

Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily. (1132 aa)

Predicted Functional Partners:

W5MTQ7_LEPOC

0.787

W5N0B4_LEPOC

0.787

LOC102685598

0.712

LOC102686030

0.695

tmem30a

0.695

ccdc47

0.542

atp1b1

0.538

LOC102695950

0.534

W5MWG0_LEPOC

0.527

atp7a

0.527

Your Current Organism:

Lepisosteus oculatus

NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC102685598	W5MAK9_LEPOC	ENSLOCP00000005416	ENSLOCP00000005418	Cell cycle control protein; Belongs to the CDC50/LEM3 family.	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.	0.712
LOC102686030	W5MAK9_LEPOC	ENSLOCP00000011485	ENSLOCP00000005418	Cell cycle control protein; Belongs to the CDC50/LEM3 family.	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.	0.695
LOC102695950	W5MAK9_LEPOC	ENSLOCP00000008088	ENSLOCP00000005418	FXYD domain-containing ion transport regulator; Belongs to the FXYD family.	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.	0.534
LOC102695950	atp1b1	ENSLOCP00000008088	ENSLOCP00000010411	FXYD domain-containing ion transport regulator; Belongs to the FXYD family.	Sodium/potassium-transporting ATPase subunit beta; This is the non-catalytic component of the active enzyme, which catalyzes the hydrolysis of ATP coupled with the exchange of Na(+) and K(+) ions across the plasma membrane. Belongs to the X(+)/potassium ATPases subunit beta family.	0.961
W5MAK9_LEPOC	LOC102685598	ENSLOCP00000005418	ENSLOCP00000005416	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.	Cell cycle control protein; Belongs to the CDC50/LEM3 family.	0.712
W5MAK9_LEPOC	LOC102686030	ENSLOCP00000005418	ENSLOCP00000011485	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.	Cell cycle control protein; Belongs to the CDC50/LEM3 family.	0.695
W5MAK9_LEPOC	LOC102695950	ENSLOCP00000005418	ENSLOCP00000008088	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.	FXYD domain-containing ion transport regulator; Belongs to the FXYD family.	0.534
W5MAK9_LEPOC	W5MTQ7_LEPOC	ENSLOCP00000005418	ENSLOCP00000011766	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.	NME/NM23 family member 8; Belongs to the NDK family.	0.787
W5MAK9_LEPOC	W5MWG0_LEPOC	ENSLOCP00000005418	ENSLOCP00000012719	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.	ATPase copper transporting beta.	0.527
W5MAK9_LEPOC	W5N0B4_LEPOC	ENSLOCP00000005418	ENSLOCP00000014073	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.	Uncharacterized protein; Belongs to the NDK family.	0.787
W5MAK9_LEPOC	atp1b1	ENSLOCP00000005418	ENSLOCP00000010411	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.	Sodium/potassium-transporting ATPase subunit beta; This is the non-catalytic component of the active enzyme, which catalyzes the hydrolysis of ATP coupled with the exchange of Na(+) and K(+) ions across the plasma membrane. Belongs to the X(+)/potassium ATPases subunit beta family.	0.538
W5MAK9_LEPOC	atp7a	ENSLOCP00000005418	ENSLOCP00000017113	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.	ATPase copper transporting alpha.	0.527
W5MAK9_LEPOC	ccdc47	ENSLOCP00000005418	ENSLOCP00000014583	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.	Coiled-coil domain containing 47.	0.542
W5MAK9_LEPOC	tmem30a	ENSLOCP00000005418	ENSLOCP00000020891	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.	Cell cycle control protein; Belongs to the CDC50/LEM3 family.	0.695
W5MTQ7_LEPOC	W5MAK9_LEPOC	ENSLOCP00000011766	ENSLOCP00000005418	NME/NM23 family member 8; Belongs to the NDK family.	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.	0.787
W5MTQ7_LEPOC	W5N0B4_LEPOC	ENSLOCP00000011766	ENSLOCP00000014073	NME/NM23 family member 8; Belongs to the NDK family.	Uncharacterized protein; Belongs to the NDK family.	0.919
W5MWG0_LEPOC	W5MAK9_LEPOC	ENSLOCP00000012719	ENSLOCP00000005418	ATPase copper transporting beta.	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.	0.527
W5N0B4_LEPOC	W5MAK9_LEPOC	ENSLOCP00000014073	ENSLOCP00000005418	Uncharacterized protein; Belongs to the NDK family.	Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.	0.787
W5N0B4_LEPOC	W5MTQ7_LEPOC	ENSLOCP00000014073	ENSLOCP00000011766	Uncharacterized protein; Belongs to the NDK family.	NME/NM23 family member 8; Belongs to the NDK family.	0.919
atp1b1	LOC102695950	ENSLOCP00000010411	ENSLOCP00000008088	Sodium/potassium-transporting ATPase subunit beta; This is the non-catalytic component of the active enzyme, which catalyzes the hydrolysis of ATP coupled with the exchange of Na(+) and K(+) ions across the plasma membrane. Belongs to the X(+)/potassium ATPases subunit beta family.	FXYD domain-containing ion transport regulator; Belongs to the FXYD family.	0.961