STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dnajc8DnaJ (Hsp40) homolog, subfamily C, member 8. (251 aa)    
Predicted Functional Partners:
sf3a2
Splicing factor 3a, subunit 2.
    
   0.779
W5M2C1_LEPOC
DEAH (Asp-Glu-Ala-His) box helicase 9.
   
  0.657
ppp1r8
Protein phosphatase 1, regulatory subunit 8b.
   
 
 0.655
W5LVK7_LEPOC
Uncharacterized protein.
    
  0.626
W5MHR8_LEPOC
RNA binding motif protein 39a.
   
  0.625
W5N880_LEPOC
Serrate RNA effector molecule homolog (Arabidopsis).
   
 
  0.622
W5MEK7_LEPOC
PRP40 pre-mRNA processing factor 40 homolog A.
   
 
  0.594
W5NA28_LEPOC
RNA binding motif protein 25b.
   
 
  0.584
ccar1
Cell division cycle and apoptosis regulator 1.
   
 
  0.573
SRRM3
Serine/arginine repetitive matrix 3.
    
  0.543
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.