STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fam83dFamily with sequence similarity 83 member D. (567 aa)    
Predicted Functional Partners:
csnk1a1
Casein kinase 1, alpha 1; Belongs to the protein kinase superfamily.
    
 
 0.719
W5N075_LEPOC
BCL2 associated athanogene 3.
      
 0.653
W5MG98_LEPOC
TPX2 microtubule nucleation factor.
   
  
 0.542
kif4a
Kinesin family member 4; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
   
  
 0.528
W5NFT8_LEPOC
PDZ binding kinase.
   
 
 0.493
W5N037_LEPOC
Uncharacterized protein.
   
  
 0.474
nek2
NIMA-related kinase 2.
   
  
 0.464
W5MFS7_LEPOC
Cell division cycle associated 8.
   
  
 0.454
apbb1
Amyloid beta (A4) precursor protein-binding, family B, member 1 (Fe65).
   
 
 0.447
hmmr
Hyaluronan-mediated motility receptor (RHAMM).
   
 
 0.447
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.