STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5MBK3_LEPOCPOU domain protein. (620 aa)    
Predicted Functional Partners:
W5MA75_LEPOC
Small nuclear RNA activating complex, polypeptide 4.
    
  0.604
gtf2b
General transcription factor IIB.
    
 0.547
gtf2e1
General transcription factor IIE, polypeptide 1, alpha.
    
  0.527
bsx
Brain-specific homeobox.
    
 0.519
snapc3
Small nuclear RNA activating complex, polypeptide 3.
   
 
  0.508
tbp
TATA box binding protein.
   
 0.490
tbpl1
TBP-like 1.
   
 0.490
W5MFH2_LEPOC
PCF11 cleavage and polyadenylation factor subunit.
     
 0.489
taf9b
TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
     
 0.470
sall4
Spalt-like transcription factor 4.
    
 0.457
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.