STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5MBP3_LEPOCTransmembrane protein 161A. (478 aa)    
Predicted Functional Partners:
klhl31
Kelch-like family member 31.
      
 0.584
tmem38a
Transmembrane protein 38A.
      
 0.560
W5NIG2_LEPOC
Popeye domain containing 3.
      
 0.541
tmx4
Thioredoxin-related transmembrane protein 4.
      
 0.493
nckap1
NCK-associated protein 1.
 
      0.480
LOC102694913
Uncharacterized protein.
      
 0.424
W5LXJ3_LEPOC
DNA_pol_B domain-containing protein.
      
 0.414
slc25a42
Solute carrier family 25 member 42; Belongs to the mitochondrial carrier (TC 2.A.29) family.
   
  
 0.414
tmem214
Transmembrane protein 214.
      
 0.412
rhbdd1
Rhomboid domain containing 1.
      
 0.402
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.