STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
zmiz1Zinc finger, MIZ-type containing 1a. (1082 aa)    
Predicted Functional Partners:
sumo1
Small ubiquitin-related modifier.
    
 0.843
sumo3
Small ubiquitin-related modifier.
    
 0.820
sumo2
Small ubiquitin-related modifier.
    
 0.820
ube2i
Ubiquitin-conjugating enzyme E2Ia; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.788
kctd2
Potassium channel tetramerization domain containing 2.
    
 0.788
LOC102683539
UBIQUITIN_CONJUGAT_2 domain-containing protein.
    
 0.788
W5MZ98_LEPOC
UBIQUITIN_CONJUGAT_2 domain-containing protein.
    
 0.788
pcna
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
   
 
 0.719
birc6
Baculoviral IAP repeat containing 6.
    
 0.717
bard1
BRCA1 associated RING domain 1.
    
 0.699
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.