STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnf207Ring finger protein 207b. (649 aa)    
Predicted Functional Partners:
W5M4J2_LEPOC
Nucleolar protein 9.
      
 0.763
W5MCV7_LEPOC
Hairy-related 3.
    
 
 0.739
hes2
Hes family bHLH transcription factor 2, tandem duplicate 2.
    
 
 0.638
W5MB18_LEPOC
Glutamate receptor, ionotropic, kainate 5; Belongs to the glutamate-gated ion channel (TC 1.A.10.1) family.
      
 0.628
W5M1R2_LEPOC
Peptidylprolyl isomerase (cyclophilin)-like 2.
      
 0.503
rps27a
Ribosomal protein S27a.
    
  0.486
rffl
Ring finger and FYVE-like domain containing E3 ubiquitin protein ligase.
      
 0.456
W5MCT9_LEPOC
G protein-coupled receptor 153.
    
 
 0.453
LOC102683058
Lipopolysaccharide-induced TNF factor.
      
 0.444
W5MSZ0_LEPOC
Zinc finger, AN1-type domain 4.
    
  0.440
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.