STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5MCC3_LEPOCAsp-B-Hydro_N domain-containing protein. (233 aa)    
Predicted Functional Partners:
W5MCE1_LEPOC
Un-named hu7910.
 
   
  0.984
LOC102691736
Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.
    
 0.826
LOC102690762
Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.
    
 0.826
LOC102685512
Uncharacterized protein.
    
 0.745
RYR3
Ryanodine receptor 3.
   
 
 0.720
W5NAB3_LEPOC
Ryanodine receptor 1b (skeletal).
   
 
 0.720
W5NIQ4_LEPOC
Ryanodine receptor 2b (cardiac).
   
 
 0.720
NEFH
Neurofilament heavy; Belongs to the intermediate filament family.
   
 0.657
ina
Internexin neuronal intermediate filament protein, alpha b; Belongs to the intermediate filament family.
   
 0.657
nefl
Neurofilament, light polypeptide b; Belongs to the intermediate filament family.
   
 0.657
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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