STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arhgef16Rho guanine nucleotide exchange factor (GEF) 16. (708 aa)    
Predicted Functional Partners:
epha2
Eph receptor A2 b.
    
 0.659
cdc42
Cell division cycle 42.
    
 0.615
ect2
Epithelial cell transforming 2.
     
0.584
W5MCT9_LEPOC
G protein-coupled receptor 153.
   
  
 0.577
als2
Alsin Rho guanine nucleotide exchange factor ALS2 b.
     
 0.574
LOC102690743
Ras homolog gene family, member Gc.
    
 0.559
rhog
Ras homolog family member Gb.
    
 0.559
EPHA8
EPH receptor A8.
    
 0.555
wrap73
WD repeat containing, antisense to TP73.
      
 0.547
W5MIT8_LEPOC
DEAD (Asp-Glu-Ala-Asp) box polypeptide 51; Belongs to the DEAD box helicase family.
      
 0.545
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.