STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ppm1dProtein phosphatase, Mg2+/Mn2+ dependent, 1Da. (580 aa)    
Predicted Functional Partners:
chek2
Checkpoint kinase 2.
    
 
 0.695
runx3
Runt-related transcription factor.
    
  0.672
runx1
Runt-related transcription factor.
    
  0.672
runx2
RUNX family transcription factor 2a.
    
  0.672
tab3
TGF-beta activated kinase 1 (MAP3K7) binding protein 3.
    
 0.626
W5NK53_LEPOC
TGF-beta activated kinase 1 (MAP3K7) binding protein 2.
    
 0.626
gsk3b
Glycogen synthase kinase 3 beta, genome duplicate b; Belongs to the protein kinase superfamily.
   
 0.615
LOC102682818
Inhibitor of nuclear factor kappa B kinase regulatory subunit gamma.
    
 0.614
optn
Optineurin.
    
 0.614
TMEM189-UBE2V1
TMEM189-UBE2V1 readthrough.
     
 0.609
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.