STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
W5MCR5_LEPOCMatrilin 1. (645 aa)    
Predicted Functional Partners:
lum
Lumican.
   
 
 0.742
rbpjl
Recombination signal binding protein for immunoglobulin kappa J region-like.
   
 0.573
rbpj
Recombination signal binding protein for immunoglobulin kappa J region b.
    
 0.571
mst1r
Macrophage stimulating 1 receptor b.
    
  0.528
met
MET proto-oncogene, receptor tyrosine kinase.
    
  0.528
W5N9Y4_LEPOC
Transforming growth factor beta; Belongs to the TGF-beta family.
    
 0.527
ptk7
Protein tyrosine kinase 7a; Belongs to the protein kinase superfamily. Tyr protein kinase family.
    
  0.522
NCSTN
Nicastrin.
    
 0.519
ripk4
Receptor-interacting serine-threonine kinase 4.
   
  0.504
MFAP2
Microfibril associated protein 2.
   
 0.504
Your Current Organism:
Lepisosteus oculatus
NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.