vdr protein (Lepisosteus oculatus) - STRING interaction network

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second shell of interactors

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proteins of unknown 3D structure

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

Your Input:

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Experiments

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[Homology]

Score

vdr

Vitamin D receptor a. (433 aa)

Predicted Functional Partners:

med1

0.956

ncoa3

0.913

ncoa2

0.913

ncoa1

0.913

LOC102684941

0.871

RXRA

0.871

nr1d2

0.871

W5M717_LEPOC

0.848

W5MFZ2_LEPOC

0.848

ppargc1a

0.718

Your Current Organism:

Lepisosteus oculatus

NCBI taxonomy Id: 7918
Other names: L. oculatus, spotted gar

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC102684941	RXRA	ENSLOCP00000001534	ENSLOCP00000005489	Retinoid X receptor, gamma b.	Retinoid X receptor, alpha a.	0.857
LOC102684941	W5M717_LEPOC	ENSLOCP00000001534	ENSLOCP00000004175	Retinoid X receptor, gamma b.	Nuclear receptor corepressor 1.	0.929
LOC102684941	W5MFZ2_LEPOC	ENSLOCP00000001534	ENSLOCP00000007301	Retinoid X receptor, gamma b.	Nuclear receptor corepressor 2.	0.929
LOC102684941	med1	ENSLOCP00000001534	ENSLOCP00000015717	Retinoid X receptor, gamma b.	Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.956
LOC102684941	ncoa1	ENSLOCP00000001534	ENSLOCP00000019570	Retinoid X receptor, gamma b.	Nuclear receptor coactivator 1.	0.914
LOC102684941	ncoa2	ENSLOCP00000001534	ENSLOCP00000004912	Retinoid X receptor, gamma b.	Nuclear receptor coactivator.	0.914
LOC102684941	ncoa3	ENSLOCP00000001534	ENSLOCP00000004775	Retinoid X receptor, gamma b.	Nuclear receptor coactivator.	0.914
LOC102684941	nr1d2	ENSLOCP00000001534	ENSLOCP00000008260	Retinoid X receptor, gamma b.	Nuclear receptor subfamily 1, group D, member 2a.	0.633
LOC102684941	ppargc1a	ENSLOCP00000001534	ENSLOCP00000015207	Retinoid X receptor, gamma b.	Peroxisome proliferator-activated receptor gamma, coactivator 1 alpha.	0.525
LOC102684941	vdr	ENSLOCP00000001534	ENSLOCP00000006257	Retinoid X receptor, gamma b.	Vitamin D receptor a.	0.871
RXRA	LOC102684941	ENSLOCP00000005489	ENSLOCP00000001534	Retinoid X receptor, alpha a.	Retinoid X receptor, gamma b.	0.857
RXRA	W5M717_LEPOC	ENSLOCP00000005489	ENSLOCP00000004175	Retinoid X receptor, alpha a.	Nuclear receptor corepressor 1.	0.929
RXRA	W5MFZ2_LEPOC	ENSLOCP00000005489	ENSLOCP00000007301	Retinoid X receptor, alpha a.	Nuclear receptor corepressor 2.	0.929
RXRA	med1	ENSLOCP00000005489	ENSLOCP00000015717	Retinoid X receptor, alpha a.	Mediator of RNA polymerase II transcription subunit 1; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.956
RXRA	ncoa1	ENSLOCP00000005489	ENSLOCP00000019570	Retinoid X receptor, alpha a.	Nuclear receptor coactivator 1.	0.914
RXRA	ncoa2	ENSLOCP00000005489	ENSLOCP00000004912	Retinoid X receptor, alpha a.	Nuclear receptor coactivator.	0.914
RXRA	ncoa3	ENSLOCP00000005489	ENSLOCP00000004775	Retinoid X receptor, alpha a.	Nuclear receptor coactivator.	0.914
RXRA	nr1d2	ENSLOCP00000005489	ENSLOCP00000008260	Retinoid X receptor, alpha a.	Nuclear receptor subfamily 1, group D, member 2a.	0.633
RXRA	ppargc1a	ENSLOCP00000005489	ENSLOCP00000015207	Retinoid X receptor, alpha a.	Peroxisome proliferator-activated receptor gamma, coactivator 1 alpha.	0.525
RXRA	vdr	ENSLOCP00000005489	ENSLOCP00000006257	Retinoid X receptor, alpha a.	Vitamin D receptor a.	0.871